PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc02g093150.2.1
Common NameLOC100736534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 447aa    MW: 50074.4 Da    PI: 9.011
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc02g093150.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-1784133155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Solyc02g093150.2.1  84 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 133
                         78*******************......55************************997 PP

2AP2445.4e-14176226155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV+ +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Solyc02g093150.2.1 176 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 226
                         89********.7******5553..2.26**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-984133IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1684142IPR016177DNA-binding domain
PROSITE profilePS5103217.70185141IPR001471AP2/ERF domain
CDDcd000183.52E-1185140No hitNo description
Gene3DG3DSA:3.30.730.104.0E-1785141IPR001471AP2/ERF domain
SMARTSM003805.1E-3285147IPR001471AP2/ERF domain
PfamPF008471.1E-9176226IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-17176236IPR016177DNA-binding domain
CDDcd000183.12E-25176236No hitNo description
PROSITE profilePS5103215.659177234IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-16177234IPR001471AP2/ERF domain
SMARTSM003802.9E-31177240IPR001471AP2/ERF domain
PRINTSPR003675.0E-6178189IPR001471AP2/ERF domain
PRINTSPR003675.0E-6216236IPR001471AP2/ERF domain
Gene3DG3DSA:3.20.20.106.0E-4245351IPR029066PLP-binding barrel
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVGLGNGDEE QPVTRQFFPV DESEMGGVAA ENGCPNFPRA HWVGVKFYQT ETLGNTGLAR  60
PVDMVQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA  120
ARAYDRAAIK FRGVEADINF SLEDYESDLK QMTSLTKEEF VHVLRRQSTG FPRGSSKYRG  180
VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKDAV TNFDPSIYEN  240
ELNSIESTDN VADHNLDLSL GGSSSKQGSQ ELGDNRGQNS SSIMQLDIDW QRHGLRPEKQ  300
SALIDARRRE NRYNETETLQ LLSQTHLHSP ASLKHNNNNN SQVQRFGQFM RPGDQSHMIQ  360
MFPQQFGSSN YQIQFPSGSN GGRIGATNVR DLSLAATSNG SSQWQSNFPP QIFVAAAASS  420
GFPQQIVRPQ NWSSENGFHH SLMRPS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.52870.0flower| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136400.0Lycopersicon esculentum clone 132443F, mRNA sequence
GenBankHQ5869510.0Solanum lycopersicum AP2 transcription factor SlAP2c mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001233886.10.0AP2 transcription factor SlAP2c
SwissprotP479271e-122AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLF6KQN20.0F6KQN2_SOLLC; AP2 transcription factor SlAP2c
STRINGSolyc02g093150.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Representative plantOGRP4971784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-116AP2 family protein
Publications ? help Back to Top
  1. Karlova R, et al.
    Transcriptome and metabolite profiling show that APETALA2a is a major regulator of tomato fruit ripening.
    Plant Cell, 2011. 23(3): p. 923-41
    [PMID:21398570]